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Being a chemist. Oops, science is POWERFUL!

ENGL 390, 390H, and (sometimes) 398V  Class Journal

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Week 15: Blues of the last day

Hello.  

I learned so much from all of you, both your content work and also ways of seeing students respond to prompts.  THANK YOU.

Details:

I will be available on MWF, per our usual schedule by digital link

9-9-50

11-11-50

until the end of finals.

I will answer questions today.  My primary request of you is to get into your ER Reviewing TASK.  You are either on the Atlanta Train or the Boulder Train.

To those who did not show up regularly to ER work, please plan to meet with me to chat about your last chance at labor grades.  You know who you are, said gently but truthfully.

Now to the two presentations of the day: one last visual communication idea about the importance of strong transitions. The second one is fun knowledge (11 slides)  about Amanita mushrooms and the flying Santa Claus stories.

 (two metaphors, chaining back to ABT work)

Now, on to more work thinking about transitions between paragraphs and even document sections. We have two metaphors for this.  First up?  muffin tin.

In the muffin tin metaphor, we chunk information into the tins, which is natural and good. We divide complex information to conquer the complexity.  Doing this heaving cognitive lifting is necessary for analysis and even uses of the information.  However, muffin tin "scoops" of information are largely the type of information that is joined by the conjunctive and. We have yet to introduction the powerful (also wakes up reader cognition) conjunctives of but (however) and or (contrast or choices or options). We have yet to introduce the power of therefore, where we create meaning and actions based on meaning.  Recall ABT work by Randy Olson and Trey Parker of South Park.

Theory pause: One of Aristotle's canons for writing is ARRANGEMENT.  The order and "chunking" of information matters very much for reader cognition and receptivity to what you write.

Now, the (Lego) train metaphor, where the cars are different, helping us think about and, but, or, and toward the end (caboose) of therefore.

 

For your possible enjoyment, I will post holiday images on MWF in this space, ALL UNDER THIS WEEK I leave week 15 up, thusly, so you can refer to this helpful information as you walk (stressed but confident) through the fire of finals.  On the other side is some rest. Remember, the frog force is with you.

Posted on Monday, December 9, 2024 at 07:29AM by Registered CommenterMarybeth Shea | Comments Off

Week 14: heading into the turbulence of finals

Good morning.  By now, you are on Train A to Atlanta or Train B to Boulder.  See your calendar in ELMS for the schedule. Simply put? The Boulder Train people have one additional round of Writing+Reviewing in Eli Review. The Atlanta Train riders plan to wrap up sooner. 

Variations on definition work (see last week's last post)

What is an appositive? A bit of information you insert in between the subject and the verb.  You can also see appositives as little explanations in other parts of the sentence that add important detail.  APPOSITIVES must be short and add value for the reader. You need commas or other sorts of punctuation to set this off.  This image of bunny paws can help you remember to do this.  But other parts of the bunny will help you too.

  • Bunny paws, because small,  remind you of COMMAS. (see what I did there?)

  • Bunny back feet (thumpers) remind you of DASHES.                 ditto

  • Bunny ears remind you of -- wait for it -- PARENTHESES.           ditto

 

Aren’t you glad I use silly metaphors and pictures to help you remember points of punctuation?

 

 

You can use appositives to slip in -- aka nest -- short definitions in the body paragraphs.  In this way, you have more than one definition strategy to help your readers.

Variation on analysis or critique paragraphs: You can break the three point paragraphs with SHORT analysis paragraphs.

  • small analysis paragraphs between your body paragraphs of cool points -- think gold beads between larger pearls.

Voice helps, too, in analysis.  Use first person in your analysis "moves" and third person when presenting more generally.

We will also look at a Google Doc from an earlier semester where we took on questions the week before the one-article review was due.  Can be instructive, I think.

Posted on Monday, December 2, 2024 at 07:15AM by Registered CommenterMarybeth Shea | Comments Off

Week 13: toward Turkey Time and end of semester

Good morning.  I will post some helpful sentences and phrases that will help you in two ways: transition between paragraphs AND complex content and help you with mentoring words/phrases. Preview of new craft item: strategic use of voice -- first and third -- to signal your article's "voice" and your commentary voice. Note: research article reading is really a conversation with researchers.  Yes. A technical conversion, tis. 

I will talk about last Friday's ER Writing task (not too late to get in there; due TONIGHT). Then I will post (ELMS mail+calendar) the OPTIONAL ER REVIEWING TASK.

When you return from the Thanksgiving brief break., you must chose one of two paths-of-completion.  And, yes, we have a metaphor. Buy a ticket to one of two destinations.

  • Train Ride to Atlanta, planning to wrap up between the last day of class and the first weekend of finals
  • Train Ride to Boulder, planning to wrap up after the first weekend and before/on the last day of finals.
    • Send the end of this post for details and dates. I will add to ELMS calendar before Wednesday.

Ok, craft lessons, with focus on definition work-->

BEGINNING (say para three or four) with Definitions.  You can consider bullets.  These work well when the concepts are closely related. For example (two samples),

Let's review PCR types before we look at Guerro's modifications in her study:  

  1. Polymer chain reaction (PCR) tests for....
  2. Quantitative PCR (qPRC)...
  3. Pyro sequencing ....

The treatment studies for Patel's rice productivity work examine subtle soil pH variability in spring crops typical of terraced fields in SE Asia.  The soil categories, based on surveys of Thailand posted at the UN FAO (Food and Agriculture Organization) data base:

podulized categories 3-8

spodosoil category 6

hydropodosoils (two)  designed for this experience but based on  the UN's Food and Agriculture (FAO) emerging research linked here.n 

More complex definitions might need their own paragraphs. Consider defining what a highly conserved gene is and how that work helps scientists use animals for human disease. In my work with farmers and nitrogen scientists, i need to define Q method, which tests subjectivity rather than objectively.  Farmers get this but scientists tend not to.  I write a short para on Q method, followed by brief description and defense of when subjective research IS part of science inquiry.

MIDDLE PARAGRAPHS with Variation in the fat portion of the document aka locating your analysis after one or more of the body paragraphs -- you might want to write a short paragraph in YOUR VOICE after the body paragraph.  I call this the fat-pearl small gold bead necklace pattern. In this way, you place a small definition paragraph before one of your body paragraphs.

Preview: On Wednesday, I will show how you can nest short reminder definitions WITHIN sentences of body paragraphs.

ENDING--Wrapping up: What is YOUR MAIN MESSAGE here?  What take-away do you want people to remember.  Readers are cognitively awake as the document closes.  This is a good cognitive condition to remember for you as a speaker/writer and as a listener/reader. 

Sample from my field-->From Patel above and other rice studies: my main message is that nighttime temps under climate change pose kernel malformation problems for the world's most important grain.

HINT:  your ABT can be rewritten with the therefore as YOUR MAIN MESSAGE about the usefulness of findings.

---

TRAIN ATLANTA (A-train, after Duke Ellington's classic jazz-bop tune by Billy Hairston)

Friday, Dec 6 ER WRITING POST of current draft (last ER Writing interaction)

Monday, Dec 9, ER REVIEW POST to your peer group (Last ER Reviewing interaction)

Wednesday, Dec. 11: PARKING LOT FOR FINAL SUBMISSION;  Submit by Monday the 16. Earlier submissions helpful to me.

TRAIN BOULDER

Friday, Dec 6 ER WRITING POST of current draft

Monday, Dec 9, ER REVIEW POST to your peer group

Friday, Dec.13 ER WRITING POST  (last ER Writing interaction)

Monday, Dec 16, ER REVIEWING POST (last ER Reviewing interaction)

Wednesday, Dec 18 PARKING LOT FOR FINAL SUBMISSION OPENS; submit by Friday the 20

Note: time is tighter for the last interaction/revising because holidays commencing. 

We have tunes!

 

Posted on Monday, November 25, 2024 at 07:18AM by Registered CommenterMarybeth Shea | Comments Off

Week 12: previewing the "down-slope" of your one-article review

Good morning.  Sunny and somewhat warm, with chance of rain on Wednesday; then, Thursday promises to be chilly. COMPLETE YOUR ER REVIEWING TASK TONIGHT!

Where are we going? We're off to see the wizard, the wonderful wizard of Oz.  But, we have some lions and tigers and bears, oh my, left. 

Let the lions be your body paragraphs.  These are hard.  I am glad to see that most of you are wrestling with that content. Now, the next risk to vanquish-->

Let the tiger (no s, is one paragraph!) be your stats paragraph, which is a combination of you reporting what stats vetting used by your researcher AND your commentary.

Let the bear(s) be your critique paragraph. I ask you to write at least ONE comment (why the bear might be plural) where you critique the findings of your researcher.  Hint: they typcially self critique and you can report that.

You can see that we focus on the end of your review.  Therefore, do a self-check: does your review document look like a lemon? Does the reader slide off through your critique into a few, closely related conclusory ideas?

Does your document look more like a pear? Here, the reader moves through your critique into several caveats about conclusions, complexity about conclusions, policy context etc.

Hint: most people will rely on the lemon shape, as we offer two analysis paragraphs -- stats and generall critique -- then your conclusion paragraph. The order of the stats and general critique are your choice.

Good news:  I do not GRADE THE CONTENT OF YOUR STATS PARA.  Aren't you relieved?

Now, onto the hardest analysis piece: evaluating the statistics used to vet the arguments made about data inference. Statistics overview in class this week.  I urge you to talk about statistics/logos critical thinking with your science and math professors.  To warm up, the ManU Phrasebank includes a "Describe quantities" section. Then, check out the "Reporting results" section, which will help your read your paper's use of statistics or number logos.

You will get better in the future about this critical thinking as you mature as a scientist: Promise! For example, in my field of ecology and environmental science, we are in a quiet riot over frequentist, mutivariate, and Bayesian statistics.  This was an assigned reading for me, in one of my classes. Here is another.

For biomedical researchers, you may appreciate this analysis of the limits of p-values in biomedial research.

Please look at your research articles for Wednesday, noting the type of statistics tool/logos of numbers  (web exhibit with short definitions) used.  Look these up in some way to have a working definition for yourself.  Common tools or tests from student papers over the last 15 years include:

  • p-values
  • confidence intervals
  • Student's t test (and corrections)
  • analysis of variance (ANOVA); one-tail, two-tail
  • power
  • sample size
  • type of study/limits -- observational study, case note, double-blind

I recommend using the link above to warm up your brain with a short working definition (remember this critical analysis tool from the rain garden memo?) and then go to Wikipedia or even a text book to read about your selected term(s) for more detail. 

The pre-reading activity will help you enter into the complexity.  Cognitive wedge is also your thinking friend.

I simply want you to know about this area within science articles, even if you do not understand now the statistics. You would not be alone among scientists, if you don't.  I don't, in many cases.  However, I want you to leave this class with an understanding of this important piece of critical thinking for your field. 

One key idea I can wax on about, though, is cautions about the (very limited) definition of significance testing and p-values.  For fun, enjoy this comic.

More generally, your critical analysis can comment on findings, your ideas or your close reading the author critique.  The Manchester University phrasebank is really helpful.  Here are a few selections that I copy/paste here for you. From the "Being critical" section, see these categories-->

Introducing problems and limitations: theory or argument
Introducing problems and limitations: method or practice
Using evaluative adjectives to comment on research
Introducing general criticism
Introducing the critical stance of particular writers

Practical note on dividing your critique: use separate paragraphs for specific discussion on stats/logos of numbers vetting from your more general critique.  For this class, you can pick one limiation to comment on, even though in real life, you would look at more than one weakness.  In someways, to focus on one represents a short presentation at a conference.  In a seminar setting, you would present more than one weakness.  Again, the ManU Phrasebank is so helpful. From "Discussing findings"-->

Advising cautious interpretation of the findings

Another source of uncertainty is …
A note of caution is due here since …
These findings may be somewhat limited by …
These findings cannot be extrapolated to all patients.
These data must be interpreted with caution because …
It could be argued that the positive results were due to …
These results therefore need to be interpreted with caution.
In observational studies, there is a potential for bias from …
It is important to bear in mind the possible bias in these responses.
Although exclusion of X did not …, these results should be interpreted with caution.
However, with a small sample size, caution must be applied, as the findings might not be …

 

It is possible that these results are due to …
are limited to …
do not represent …
have been confounded by …
were influenced by the lack of …
may underestimate the role of …
are biased, given the self-reported nature of …
may not be reproducible on a wide scale across …
Posted on Monday, November 18, 2024 at 06:52AM by Registered CommenterMarybeth Shea | Comments Off

Week 11: (re)examine closely your research article

We are now mining the complex document for your three points (to make the "fat portion of your review), as well as looking at how to analyse/critique the work (including some stats vetting), and how to close.

First up is Lennart Nacke's useful image of a research article (some of you will need to modify this model to your narrow focus article). I have annotated this visual with some of my approach. Is large/placed in thumbnail form so either click in or open in another browser tab. 

 

Here is a resource/checklist/gathering spot for Assignment 3. Here, I try to curate the "best hits" of what we talk about, what I place in our class journal.  You may want to look now as you plan how to wrap up the semester.  Please note, that I am planning two paths to finish up:

The A-train to Atlanta (as in first not the grade) to wrap up close to the last day of class (with a parking lot strategy, as ever); AND

The B-train to Boulder (as in second not the grade) to wrap up closer to the end of finals (with a parking lot strategy but shorter).

What this means is that students riding the Boulder train with have one additional ER opportunity to give and receive feedback.

Let's chain back to Week 9 and revisit the "that and which distinction" writing craft lesson. Now, a shorter version of the that-which distinction with science-context samples. Remember: you can always punctuate this correctly. (perhaps a song)

We can also revisit empty subjects.  Why?  I want you to practice this cognitive grammar technique in Assignment 3.  Basically, do NOT USE IT and do NOT USE THERE IS/ARE in your final assignment.  This is a concerted drill on my part to show you how to use other options.  These options are nearly always clearer for the reader, especially in complex prose.

, which was not a healthy situation for the wicked witch

 

Posted on Monday, November 11, 2024 at 06:40AM by Registered CommenterMarybeth Shea | Comments Off